Hierarchy For All Packages

Package Hierarchies:

edu.berkeley.compbio.jlibsvm, edu.berkeley.compbio.jlibsvm.binary, edu.berkeley.compbio.jlibsvm.kernel, edu.berkeley.compbio.jlibsvm.labelinverter, edu.berkeley.compbio.jlibsvm.legacyexec, edu.berkeley.compbio.jlibsvm.multi, edu.berkeley.compbio.jlibsvm.oneclass, edu.berkeley.compbio.jlibsvm.qmatrix, edu.berkeley.compbio.jlibsvm.regression, edu.berkeley.compbio.jlibsvm.scaler, edu.berkeley.compbio.jlibsvm.util

Class Hierarchy

• java.lang.Object
  • edu.berkeley.compbio.ml.cluster.AbstractClusteringMethod<T,C> (implements edu.berkeley.compbio.ml.cluster.ClusteringMethod<T>)
    • edu.berkeley.compbio.jlibsvm.multi.MultiClassificationSVMAdapter<T> (implements edu.berkeley.compbio.ml.cluster.SampleInitializedBatchClusteringMethod<T>, edu.berkeley.compbio.ml.cluster.SupervisedClusteringMethod<T>)
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • edu.berkeley.compbio.jlibsvm.util.SubtractionMap<P,L>
  • edu.berkeley.compbio.jlibsvm.AbstractSvmProblem<L,P,R> (implements edu.berkeley.compbio.jlibsvm.SvmProblem<L,P,R>)
    • edu.berkeley.compbio.jlibsvm.ExplicitSvmProblemImpl<L,P,R> (implements edu.berkeley.compbio.jlibsvm.ExplicitSvmProblem<L,P,R>)
      • edu.berkeley.compbio.jlibsvm.binary.BinaryClassificationProblemImpl<L,P> (implements edu.berkeley.compbio.jlibsvm.binary.BinaryClassificationProblem<L,P>)
        • edu.berkeley.compbio.jlibsvm.binary.BooleanClassificationProblemImpl<L,P>
        • edu.berkeley.compbio.jlibsvm.binary.MutableBinaryClassificationProblemImpl<L,P> (implements edu.berkeley.compbio.jlibsvm.MutableSvmProblem<L,P,R>)
      • edu.berkeley.compbio.jlibsvm.multi.MultiClassProblemImpl<L,P> (implements edu.berkeley.compbio.jlibsvm.multi.MultiClassProblem<L,P>)
        • edu.berkeley.compbio.jlibsvm.multi.MutableMultiClassProblemImpl<L,P> (implements edu.berkeley.compbio.jlibsvm.MutableSvmProblem<L,P,R>)
      • edu.berkeley.compbio.jlibsvm.regression.RegressionProblemImpl<P,R> (implements edu.berkeley.compbio.jlibsvm.regression.RegressionProblem<P,R>)
        • edu.berkeley.compbio.jlibsvm.regression.MutableRegressionProblemImpl<P> (implements edu.berkeley.compbio.jlibsvm.MutableSvmProblem<L,P,R>)
        • edu.berkeley.compbio.jlibsvm.oneclass.OneClassProblemImpl<L,P> (implements edu.berkeley.compbio.jlibsvm.oneclass.OneClassProblem<L,P>)
          • edu.berkeley.compbio.jlibsvm.oneclass.MutableOneClassProblemImpl<L,P> (implements edu.berkeley.compbio.jlibsvm.MutableSvmProblem<L,P,R>)
  • edu.berkeley.compbio.jlibsvm.util.ArrayParsers
  • edu.berkeley.compbio.jlibsvm.multi.BatchClusterLabelInverter<T> (implements edu.berkeley.compbio.jlibsvm.labelinverter.LabelInverter<L>)
  • edu.berkeley.compbio.jlibsvm.labelinverter.ByteLabelInverter (implements edu.berkeley.compbio.jlibsvm.labelinverter.LabelInverter<L>)
  • edu.berkeley.compbio.jlibsvm.binary.C_SVCTest
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • edu.berkeley.compbio.jlibsvm.legacyexec.svm_toy
  • edu.berkeley.compbio.ml.CrossValidationResults
    • edu.berkeley.compbio.ml.BinaryCrossValidationResults
      • edu.berkeley.compbio.jlibsvm.binary.SvmBinaryCrossValidationResults<L,P>
    • edu.berkeley.compbio.ml.MultiClassCrossValidationResults<L>
      • edu.berkeley.compbio.jlibsvm.multi.SvmMultiClassCrossValidationResults<L,P>
    • edu.berkeley.compbio.jlibsvm.regression.RegressionCrossValidationResults<P,R>
  • edu.berkeley.compbio.jlibsvm.kernel.GammaKernel<T> (implements edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<P>)
    • edu.berkeley.compbio.jlibsvm.kernel.CompositeGaussianRBFKernel<T>
    • edu.berkeley.compbio.jlibsvm.kernel.GaussianRBFKernel
    • edu.berkeley.compbio.jlibsvm.kernel.PolynomialKernel
    • edu.berkeley.compbio.jlibsvm.kernel.SigmoidKernel
  • edu.berkeley.compbio.jlibsvm.ImmutableSvmParameter<L,P>
    • edu.berkeley.compbio.jlibsvm.ImmutableSvmParameterGrid<L,P>
    • edu.berkeley.compbio.jlibsvm.ImmutableSvmParameterPoint<L,P>
  • edu.berkeley.compbio.jlibsvm.ImmutableSvmParameter.Builder<L,P>
    • edu.berkeley.compbio.jlibsvm.ImmutableSvmParameterGrid.Builder<L,P>
    • edu.berkeley.compbio.jlibsvm.ImmutableSvmParameterPoint.Builder<L,P>
  • edu.berkeley.compbio.jlibsvm.qmatrix.KernelQMatrix<P> (implements edu.berkeley.compbio.jlibsvm.qmatrix.QMatrix<P>)
    • edu.berkeley.compbio.jlibsvm.qmatrix.BasicKernelQMatrix<P>
      • edu.berkeley.compbio.jlibsvm.qmatrix.BooleanInvertingKernelQMatrix<P>
  • edu.berkeley.compbio.jlibsvm.kernel.LinearKernel (implements edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<P>)
  • edu.berkeley.compbio.jlibsvm.scaler.LinearScalingModelLearner (implements edu.berkeley.compbio.jlibsvm.scaler.ScalingModelLearner<P>)
  • edu.berkeley.compbio.jlibsvm.scaler.LinearScalingModelLearner.LinearScalingModel (implements edu.berkeley.compbio.jlibsvm.scaler.ScalingModel<P>)
  • edu.berkeley.compbio.jlibsvm.util.MathSupport
  • edu.berkeley.compbio.jlibsvm.scaler.NoopScalingModel<P> (implements edu.berkeley.compbio.jlibsvm.scaler.ScalingModel<P>)
  • edu.berkeley.compbio.jlibsvm.scaler.NoopScalingModelLearner<P> (implements edu.berkeley.compbio.jlibsvm.scaler.ScalingModelLearner<P>)
  • edu.berkeley.compbio.jlibsvm.kernel.PrecomputedKernel (implements edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<P>)
  • edu.berkeley.compbio.jlibsvm.SigmoidProbabilityModel
  • edu.berkeley.compbio.jlibsvm.SolutionVector<P> (implements java.lang.Comparable<T>)
  • edu.berkeley.compbio.jlibsvm.Solver<L,P>
    • edu.berkeley.compbio.jlibsvm.binary.BinarySolver<L,P>
    • edu.berkeley.compbio.jlibsvm.oneclass.OneClassSolver<L,P>
    • edu.berkeley.compbio.jlibsvm.regression.RegressionSolver<P>
    • edu.berkeley.compbio.jlibsvm.Solver_NU<L,P>
      • edu.berkeley.compbio.jlibsvm.binary.BinarySolverNu<L,P>
      • edu.berkeley.compbio.jlibsvm.regression.RegressionSolverNu<P>
  • edu.berkeley.compbio.jlibsvm.Solver.SolutionVectorPair
  • edu.berkeley.compbio.jlibsvm.util.SparseVector
  • edu.berkeley.compbio.jlibsvm.labelinverter.StringLabelInverter (implements edu.berkeley.compbio.jlibsvm.labelinverter.LabelInverter<L>)
  • edu.berkeley.compbio.jlibsvm.legacyexec.svm_predict
  • edu.berkeley.compbio.jlibsvm.legacyexec.svm_scale
  • edu.berkeley.compbio.jlibsvm.legacyexec.svm_train
  • edu.berkeley.compbio.jlibsvm.SvmContext<L,P>
    • edu.berkeley.compbio.jlibsvm.SolutionModel<L,P>
      • edu.berkeley.compbio.jlibsvm.binary.AlphaModel<L,P>
        • edu.berkeley.compbio.jlibsvm.binary.BinaryModel<L,P> (implements edu.berkeley.compbio.jlibsvm.ContinuousModel<P>, edu.berkeley.compbio.jlibsvm.DiscreteModel<L,P>)
        • edu.berkeley.compbio.jlibsvm.regression.RegressionModel<P> (implements edu.berkeley.compbio.jlibsvm.ContinuousModel<P>)
          • edu.berkeley.compbio.jlibsvm.oneclass.OneClassModel<L,P> (implements edu.berkeley.compbio.jlibsvm.DiscreteModel<L,P>)
      • edu.berkeley.compbio.jlibsvm.multi.MultiClassModel<L,P> (implements edu.berkeley.compbio.jlibsvm.DiscreteModel<L,P>)
    • edu.berkeley.compbio.jlibsvm.SVM<L,P,R>
      • edu.berkeley.compbio.jlibsvm.binary.BinaryClassificationSVM<L,P>
        • edu.berkeley.compbio.jlibsvm.binary.C_SVC<L,P>
        • edu.berkeley.compbio.jlibsvm.binary.Nu_SVC<L,P>
      • edu.berkeley.compbio.jlibsvm.multi.MultiClassificationSVM<L,P>
      • edu.berkeley.compbio.jlibsvm.regression.RegressionSVM<P,R>
        • edu.berkeley.compbio.jlibsvm.regression.EpsilonSVR<P,R>
        • edu.berkeley.compbio.jlibsvm.regression.Nu_SVR<P,R>
        • edu.berkeley.compbio.jlibsvm.oneclass.OneClassSVC<L,P>
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • edu.berkeley.compbio.jlibsvm.SvmException
  • edu.berkeley.compbio.jlibsvm.multi.VotingResult<L>
  • edu.berkeley.compbio.jlibsvm.scaler.ZscoreScalingModelLearner (implements edu.berkeley.compbio.jlibsvm.scaler.ScalingModelLearner<P>)
  • edu.berkeley.compbio.jlibsvm.scaler.ZscoreScalingModelLearner.ZscoreScalingModel (implements edu.berkeley.compbio.jlibsvm.scaler.ScalingModel<P>)

Interface Hierarchy

• edu.berkeley.compbio.jlibsvm.ContinuousModel<P>
• edu.berkeley.compbio.jlibsvm.DiscreteModel<L,P>
• edu.berkeley.compbio.jlibsvm.kernel.KernelFunction<P>
• edu.berkeley.compbio.jlibsvm.labelinverter.LabelInverter<L>
• edu.berkeley.compbio.jlibsvm.LabelParser<L>
• edu.berkeley.compbio.jlibsvm.qmatrix.QMatrix<P>
• edu.berkeley.compbio.jlibsvm.scaler.ScalingModel<P>
• edu.berkeley.compbio.jlibsvm.scaler.ScalingModelLearner<P>
• edu.berkeley.compbio.jlibsvm.SvmProblem<L,P,R>
  • edu.berkeley.compbio.jlibsvm.binary.BinaryClassificationProblem<L,P>
  • edu.berkeley.compbio.jlibsvm.ExplicitSvmProblem<L,P,R>
    • edu.berkeley.compbio.jlibsvm.MutableSvmProblem<L,P,R>
  • edu.berkeley.compbio.jlibsvm.multi.MultiClassProblem<L,P>
  • edu.berkeley.compbio.jlibsvm.MutableSvmProblem<L,P,R>
  • edu.berkeley.compbio.jlibsvm.oneclass.OneClassProblem<L,P>
  • edu.berkeley.compbio.jlibsvm.regression.RegressionProblem<P,R>
    • edu.berkeley.compbio.jlibsvm.oneclass.OneClassProblem<L,P>

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • edu.berkeley.compbio.jlibsvm.SolutionVector.Status
    • edu.berkeley.compbio.jlibsvm.multi.MultiClassModel.OneVsAllMode
    • edu.berkeley.compbio.jlibsvm.multi.MultiClassModel.AllVsAllMode